The integrated cluster and Cluster Management Node installation is the default operation of SIA, but can be specified explicitly with the --install-all option. It works as follows:

For other operation modes, such to install specific components on the local machine, please refer to Appendix A, Self-Installing Archive (SIA) Reference.

Log into the chosen installation machine, become root and make sure that the SIA file is stored in a directory with write access (/tmp is fine). Execute the script:

# sh Dolphin_eXpressWare_<version>.sh

The script will ask questions to retrieve information for the installation. You will notice that all questions are Yes/no questions, and that the default answer is marked by a capital letter, which can be chosen by just pressing Enter. A typical installation looks like this:

[root@scimple tmp]# sh ./Dolphin_eXpressWare-Linux_x86-PX-v5_5_0_2018_Jan_20.sh
Verifying archive integrity... All good.
Uncompressing Dolphin DIS 5.5.0
#* Logfile is /tmp/DIS_install.log_140 on tiger-0

#*
#+ Dolphin ICS - Software installation (version: 1.52 $ of: 2015/06/30 16:31:32 $)
#+

#* Installing a full cluster (Cluster Nodes and Cluster Management Node) .

#* This script will install Dolphin PCI Express drivers, tools and services
#+ on all Cluster Nodes of the cluster and on the Cluster Management Node.
#+
#+ All available options of this script are shown with option '--help'

# >>> OK to proceed with cluster installation? [Y/n]y

# >>> Will the local machine <tiger-0> serve as Cluster Management Node? [Y/n]y

The default choice is to use the local machine as Cluster Management Node. If you answer n, the installer will ask you for the hostname of the designated Cluster Management Node machine. Each cluster needs its own Cluster Management Node machine.

Please note that the complete installation is logged to a file which is shown at the very top (here: /tmp/DIS_install.log_140). In case of installation problems, this file is very useful to Dolphin support.

#* NOTE: Cluster configuration files can be specified now, or be generated
#+ ..... during the installation.
# >>> Do you have a 'dishosts.conf' file that you want to use for installation? [y/N]n

Because this is the initial installation, no installed configuration files could be found. If you have prepared or received configuration files, they can be specified now by answering y. In this case, no GUI application needs to run during the installation, allowing for a shell-only installation.

For the default answer, the hostnames of the Cluster Nodes need to be specified (see below), and the cluster configuration is created automatically.

#* NOTE:
#+ No cluster configuration file (dishosts.conf) available.
#+ You can now specify the Cluster Nodes that are attached to the PCI
#+ Express network. The necessary configuration files can then
#+ be created based on this list of Cluster Nodes.
#+
#+ Please enter hostname or IP addresses of the Cluster Nodes one per line.
#* When done, enter a single full period ('.').
#+ (proposed hostname is given in [brackets])
# >>> Cluster Node hostname/IP address <full period '.' when done> []tiger-1
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-2]
-> tiger-2
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-3]
-> tiger-3
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-4]
-> tiger-4
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-5]
-> tiger-5
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-6]
-> tiger-6
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-7]
-> tiger-7
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-8]
-> tiger-8
# >>> Cluster Node hostname/IP address <full period '.' when done> [tiger-9].

The hostnames or IP-addresses of all Cluster Nodes need to be entered. The installer suggests the hostnames if possible in brackets. To accept a suggestion, just press Enter. Otherwise, enter the hostname or IP address. The data entered is verified to represent an accessible hostname. If a Cluster Node has multiple IP addresses / hostnames, make sure you specify the one that is visible for the installation machine and the Cluster Management Node.

When all hostnames are entered, enter a single full period . to finish.

#* NOTE:
#+ The kernel modules need to be built on a machine with the same kernel
#* version and architecture of the interconnect Cluster Node. By default, the first
#* given interconnect Cluster Node is used for this. You can specify another build
#* machine now.
# >>> Build kernel modules on Cluster Node tiger-1 ? [Y/n]y

If you answer n at this point, you can enter the hostname of another machine on which the kernel modules are built. Make sure it matches the Cluster Nodes for CPU architecture and kernel version.

# >>> Can you access all machines (local and remote) via password-less ssh? [Y/n]y

The installer will later on verify if the password-less ssh access actually works. If you answer n, the installer will set up password-less ssh for you on all Cluster Nodes and the Cluster Management Node. You will need to enter the root password once for each Cluster Node and the password.

The password-less ssh access remain active after the installation. To disable it again, remove the file /root/.ssh/authorized_keys from all Cluster Nodes and the Cluster Management Node.

#* NOTE:
#+ It is recommnended that interconnect Cluster Nodes are rebooted after the
#+ initial driver installation to ensure that large memory allocations will succeed.
#+ You can omitt this reboot, or do it anytime later if necesary.
# >>> Reboot all interconnect Cluster Nodes 
        (tiger-1 tiger-2 tiger-3 tiger-4 tiger-5 tiger-6 tiger-7 tiger-8)? [y/N]n

For optimal performance, the low-level driver needs to allocate some amount of kernel memory. This allocation can fail on a system that has been under load for a long time. If you are not installing on a live system, rebooting the Cluster Nodes is therefore offered here. You can perform the reboot manually later on to achieve the same effect.

If chosen, the reboot will be performed by the installer without interrupting the installation procedure.

#* NOTE:
#+ About to INSTALL Dolphin PCI Express interconnect drivers on these Cluster Nodes:
... tiger-1
... tiger-2
... tiger-3
... tiger-4
... tiger-5
... tiger-6
... tiger-7
... tiger-8
#+ About to BUILD Dolphin PCI Express interconnect drivers on this Cluster Node:
... tiger-1
#+ About to install management and control services on the Cluster Management Node machine:
... tiger-0
#* Installing to default target path /opt/DIS on all machines
.. (or the current installation path if this is an update installation).
# >>> OK to proceed? [Y/n]y

The installer presents an installation summary and asks for confirmation. If you answer n at this point, the installer will exit and the installation needs to be restarted.

#* NOTE:
#+ Testing ssh-access to all Cluster Nodes and gathering configuration.
#+
#+ If you are asked for a password, the ssh access to this Cluster Node without
#+ password is not working. In this case, you need to interrupt with CTRL-c
#+ and restart the script answering 'no' to the intial question about ssh.
... testing ssh to tiger-1
... testing ssh to tiger-2
... testing ssh to tiger-3
... testing ssh to tiger-4
... testing ssh to tiger-5
... testing ssh to tiger-6
... testing ssh to tiger-7
... testing ssh to tiger-8
#+ OK: ssh access is working
#+ OK: Cluster Nodes are homogenous
#* OK: found 1 interconnect fabric(s).

#* Testing ssh to other Cluster Nodes
... testing ssh to tiger-1
... testing ssh to tiger-0
... testing ssh to tiger-0
#* OK.

The ssh-access is tested, and some basic information is gathered from the Cluster Nodes to verify that the Cluster Nodes are homogeneous and equipped with at least one PCI Express adapter and meet the other requirements. If a required RPM package was missing, it would be indicated here with the option to install it (if yum can be used), or to fix the problem manually and retry.

If the test for homogeneous Cluster Nodes failed, please refer to section Section 2, “Installation of a Heterogeneous Cluster” for information on how to install the software stack.

#* Building Cluster Node RPM packages on tiger-1 in /tmp/tmp.AEgiO27908
#+ This will take some minutes...
#* Logfile is /tmp/DIS_install.log_983 on tiger-1

#* OK, Cluster Node RPMs have been built.

#* Building Cluster Management Node RPM packages on scimple in /tmp/tmp.dQdwS17511
#+ This will take some minutes...
#* Logfile is /tmp/DIS_install.log_607 on scimple

#* OK, Cluster Management Node RPMs have been built.

#* Copying RPMs that have been built:
/tmp/frontend_RPMS/Dolphin-NetworkAdmin-PX-5.5.0-1.x86_64.rpm
/tmp/frontend_RPMS/Dolphin-NetworkHosts-PX-5.5.0-1.x86_64.rpm
/tmp/frontend_RPMS/Dolphin-SISCI-PX-devel-5.5.0-1.x86_64.rpm
/tmp/frontend_RPMS/Dolphin-NetworkManager-PX-5.5.0-1.x86_64.rpm
/tmp/node_RPMS/Dolphin-SISCI-PX-5.5.0-1.x86_64.rpm
/tmp/node_RPMS/Dolphin-SISCI-PX-devel-5.5.0-1.x86_64.rpm
/tmp/node_RPMS/Dolphin-SuperSockets-PX-5.5.0-1.x86_64.rpm
/tmp/node_RPMS/Dolphin-PX-5.5.0-1.x86_64.rpm

The binary RPM packages matching the Cluster Nodes and Cluster Management Node are built and copied to the directory from where the installer was invoked. They are placed into the subdirectories node_RPMS and frontend_RPMS for later use (see the SIA option --use-rpms).

#* To install/update the Dolphin PCI Express services like SuperSockets, all running
#+ Dolphin PCI Express services needs to be stopped. This requires that all user
#+ applications using SuperSockets (if any) need to be stopped NOW.
# >>> Stop all Dolpin PCI Express services (SuperSockets) NOW? [Y/n]y

#* OK: all Dolphin PCI Express services (if any) stopped for upgrade.

On an initial installation, there will be no user applications using SuperSockets, so you can easily answer y right away.

#* Installing Cluster Node tiger-1
#* OK.
#* Installing Cluster Node tiger-2
#* OK.
#* Installing Cluster Node tiger-3
#* OK.
#* Installing Cluster Node tiger-4
#* OK.
#* Installing Cluster Node tiger-5
#* OK.
#* Installing Cluster Node tiger-6
#* OK.
#* Installing Cluster Node tiger-7
#* OK.
#* Installing Cluster Node tiger-8
#* OK.
#* Installing machine scimple as Cluster Management Node.
#* NOTE:
#+ You need to create the cluster configuration files 'dishosts.conf'
#+ and 'networkmanager.conf' using the graphical tool 'dis_netconfig' or dis_mkconf
#+ which will be launched now.


# >>> Are all cables connected, and do all LEDs on the Dolphin adapters light green? [Y/n]

The Cluster Nodes get installed and drivers and the node manager are started. Then, the basic packages are installed on the Cluster Management Node, and the dis_netconfig application is launched to create the required configuration files /etc/dis/dishosts.conf and /etc/dis/networkmanager.conf if they do not already exist. The script will wait at this point until the configuration files have been created with dis_netconfig, and until you confirm that all cables have been connected. This is described in the next section.

For typical problems at this point of the installation, please refer to Chapter 16, FAQ.

The Dolphin Network Configurator, dis_netconfig is a GUI tool that helps gathering the cluster configuration (and is used to create the cluster configuration file /etc/dis/dishosts.conf and the Network Manager configuration file /etc/dis/networkmanager.conf). A few global interconnect properties need to be set, and the position of each Cluster Node within the interconnect topology needs to be specified.

3.4.1. Cluster Edit

When dis_netconfig is launched, it first displays a dialog box where the global interconnect properties need to be specified (see Figure 4.1, “Cluster Edit dialog of dis_netconfig”).

Figure 4.1. Cluster Edit dialog of dis_netconfig

3.4.1.1. Interconnect Topology

In the upper half of the Cluster Edit dialog, you need to specify the interconnect topology that you will be using with your cluster. If dis_netconfig is launched by the installation script, the script tries to set these values correctly, but you need to verify the settings.

First, select the Topology of your cluster: either you use a single PCI Express switch for 2-8 Cluster Nodes, or 2 Cluster Nodes with direct connection.

Then, specify the Number of Cluster Nodes in your cluster.

The Number of fabrics needs to be set to the minimum number of adapters in every Cluster Node (typically, this value is 1).

The Socketadapter setting determines which of the available adapter is used for SuperSockets:

• SINGLE 0: only adapter 0 is used

• SINGLE 1: only adapter 1 is used (only valid for more than one fabric)

• Channel Bonding: SuperSockets distributes the traffic across both adapters 0 and 1 (only valid for more than one fabric)

• NONE: SuperSockets should not be used.

You then need to Set Link Widths for each Cluster Node. This can be set to x4, x8 or x16. The default is x8. The value must be set to x4 or x8 if a x4 or x8 cable is used, otherwise the low level driver will try to reset the link to establish a x8 or x16.

The Advanced Edit option does not need to be changed: the session between the Cluster Nodes should typically always be set up automatically.

3.4.1.2. SuperSockets Network Address

If your cluster operates within its own subnet and you want all Cluster Nodes within this subnet to use SuperSockets (having PCI Express installed), you can simplify the configuration by specifying the address of this subnet in this dialog. To do so, activate the Network Address field and enter the cluster IP subnet address including the mask. I.e., if all your Cluster Node communicate via an IP interface with the address 192.168.4.*, you would enter 192.168.4.0/8 here.

SuperSockets will try to use the PCI Express for any Cluster Node in this subnet when it connects to another Cluster Node of this subnet. If using PCI Express is not possible, i.e. because one or both Cluster Nodes are only equipped with an Ethernet interface, SuperSockets will automatically fall back to Ethernet. Also, if a Cluster Node gets assigned a new IP address within this subnet, you don't need to change the SuperSockets configuration. Assigning more than one subnet to SuperSockets is also possible, but this type of configuration is not yet supported by dis_netconfig. See section Section 1.1, “dishosts.conf” on how to edit dishosts.conf accordingly.

This type of configuration is required if the same Cluster Node can be assigned varying IP addresses over time, as it is done for fail-over purposes where one machine takes over the identity of a machine that has failed. For standard setups where the assignment of IP addresses to Cluster Nodes is static, it is recommended to not use this type of configuration, but instead use the default static SuperSockets configuration type.

3.4.1.3. Status Notification

In case you want to be informed on any change of the interconnect status (i.e. an interconnect link was disabled due to errors, or a Cluster Node has gone down), active the check box Alert target and enter the alert target and the alert script to be executed. The default alert script is alert.sh and will send an e-mail to the address specified as alert target.

Other alert scripts can be created and used, which may require another type of alert target (i.e. a cell phone number to send an SMS). For more information on using status notification, please refer to Chapter 15, Advanced Topics,Section 1, “Notification on Interconnect Status Changes”.

3.4.2. Node Arrangement

In the next step, the main pane of the dis_netconfig will present the Cluster Nodes in the cluster arranged in the topology that was selected in the previous dialog. To change this topology and other general interconnect settings, you can always click Edit in the Cluster Configuration area which will bring up the Cluster Edit dialog again.

If the font settings of your X server cause dis_netconfig to print unreadable characters, you can change the font size and the type with the drop-down box at the top of the windows, next to the floppy disk icon.

Figure 4.2. Main dialog of dis_netconfig

Figure 4.3. Node dialog of dis_netconfig

In the Node dialog you specify if you want to use 4, 8 or 16 PCI Express lanes. The value must be set to x4 if you are using a x4 to x8 transition cable or a x4 fiber cable.

The serial number field specifies which adapter will have its index unchanged in the adapters' array. If two cards are interchanged, or if one of the two is replaced, then the card with its serial number fully specified is guaranteed to have the same adapter number. Applications can continue to use the card based on its adapter number.

After you have assigned the correct hostname to this machine, you may need to configure SuperSockets on this Cluster Node. If you selected the Network Address in the cluster configuration dialog (see above), then SuperSockets will use this subnet address and will not allow for editing this property on the Cluster Nodes. Otherwise, you can choose between 3 different options for each of the currently supported 2 SuperSockets accelerated IP interfaces per Cluster Node:

disable

Do not use SuperSockets. If you set this option for both fields, SuperSockets can not be used with this Cluster Node, although the related kernel modules will still be loaded.

static

Enter the hostname or IP address for which SuperSockets should be used. This hostname or IP address will be statically assigned to this physical Cluster Node (its PCI Express interconnect adapter).

Choosing a static socket means that the mapping between the Cluster Node (its adapters) and the specified hostname/IP address is static and will be specified within the configuration file dishosts.conf. All Cluster Nodes will use this identical file (which is automatically distributed from the Cluster Management Node to the Cluster Nodes by the Network Manager) to perform this mapping.

This option works fine if the Cluster Nodes in your cluster don't change their IP addresses over time and is recommend as it does not incur any name resolution overhead.

dynamic

Enter the hostname or IP address for which SuperSockets should be used. This hostname or IP address will be dynamically resolved to the PCI Express interconnect adapter that is installed in the machine with this hostname/IP address. SuperSockets will therefore resolve the mapping between adapters and hostnames/IP addresses dynamically. This incurs a certain initial overhead when the first connection between two Cluster Nodes is set up and in some other specific cases.

This option is similar to using a subnet (see Section 3.4.1.2, “SuperSockets Network Address”), but resolves only the explicitly specified IP addresses (for all Cluster Nodes) and not all possible IP addresses of a subnet. Use this option if Cluster Nodes change their IP addresses i.e. in a fail-over setup.

If the cables are already connected, please proceed with section Section 3.5.2, “Verifying the Cabling”.

The cables can be installed while Cluster Nodes are powered up.

The setup script will wait with a question for you to continue:

# >>> Are all cables connected, and are all Link LEDs on the Dolphin adapters green? [Y/n] 

Once the cables are connected, no more user interaction is required. Please confirm that all cables are connected and all LEDs are green, and the installation will proceed. The Network Manager will be started on the Cluster Management Node, configuring all cluster Cluster Nodes according to the configuration specified in dishosts.conf. After this, a number of tests are run on the cluster to verify that the interconnect was set up correctly and delivers the expected performance. You will see output like this:

#* NOTE: checking for cluster configuration to take effect:
... node tiger-1:
... node tiger-2:
... node tiger-3:
... node tiger-4:
... node tiger-5:
... node tiger-6:
... node tiger-7:
... node tiger-8:
#* OK. 

#* Installing remaining Cluster Management Node packages

#* NOTE:
#+ To compile SISCI applications (like NMPI), the SISCI-devel RPM needs to be
#+ installed. It is located in the frontend_RPMS and node_RPMS directories.

#* OK. 

If no problems are reported (like in the example above), you are done with the installation and can start to use your DolphinExpress accelerated cluster. Otherwise, refer to the next subsections and Section 3.8, “Interconnect Validation using the management GUI” or Section 3.9, “Interconnect Validation using the command line” to learn about the individual tests and how to fix problems reported by each test.

#* NOTE: Testing static interconnect connectivity between Cluster Nodes.
... node tiger-1:
TEST RESULT: *PASSED*
... node tiger-2:
TEST RESULT: *PASSED*
... node tiger-3:
TEST RESULT: *PASSED*
... node tiger-4:
TEST RESULT: *PASSED*
... node tiger-5:
TEST RESULT: *PASSED*
... node tiger-6:
TEST RESULT: *PASSED*
... node tiger-7:
TEST RESULT: *PASSED*
... node tiger-8:
TEST RESULT: *PASSED*

#* NOTE: Verifying SuperSockets configuration on all Cluster Nodes.
#+ No SuperSocket configuration problems found.

#* NOTE:
#+ Verifying SuperSockets performance for tiger-2 (testing via tiger-1).
#+ Checking Ethernet performance
... single-byte latency: 56.63 us
#+ Checking Dolphin PCI Express SuperSockets performance
... single-byte latency: 0.99 us
... Latency rating: Very good. SuperSockets are working well.
#+ SuperSockets performance tests done. 

#* OK: Cluster installation completed.

#+ Remember to use LD_PRELOAD=libksupersockets.so for all applications that
#+ should use Dolphin PCI Express SuperSockets.
# >>> Do you want to start the GUI tool for interconnect adminstration (GUI admin)? [y/N]n

#* RPM packages that were used for installation are stored in
#+ /tmp/node_PRMS and /tmp/frontend_PRMS. 

If for some reason the installation was not successful, you can easily and safely repeat it by simply invoking the SIA again. Please consider:

If you still fail to install the software successfully, refer to Chapter 7, Interconnect Maintenance.

Every installation attempt creates a differently named log file; it's name is printed at the very beginning of the installation.Please also include the configuration files that can be found in /etc/dis on the Cluster Management Node.

Dolphin provides a graphical tool named dis_admin. dis_admin serves as a tool to visually view the status and run diagnostics on your PCIe network. It shows an overview of the status of all adapters and links of a cluster and allows to perform detailed status queries. It also provides means to manually control the interconnect, inspect and set options and perform interconnect tests. For a complete description of dis_admin, please refer to Appendix B, dis_admin Reference. Here, we will only describe how to use dis_admin to verify the newly installed PCI Express network.

3.8.2. Starting dis_admin

dis_admin will be installed in the sbin directory of the installation path (default: /opt/DIS/sbin/dis_admin). It will be within the PATH after you login as root, but can also be run by non-root users.

After it has been started, you will need to connect to the Network Manager controlling your cluster. Click the Connect button in the tool bar and enter the appropriate hostname or IP address of the Network Manager.

Figure 4.4. Dolphin dis_admin GUI - Connect to Network Manager

Figure 4.5. Dolphin dis_admin GUI - Representation of topology

dis_admin will present you a graphical representation of the cluster Cluster Nodes and the interconnect links between them.

Dolphin provides a console tool named dis_admin_commandline. dis_admin_commandline shows an overview of the status of all nodes and links of a cluster and allows to perform a limited set of queries.

dis_admin_commandline will be installed on the Cluster Management Node by the SIA with the --install-frontend option, or use the Dolphin-NetworkAdmin RPM package from the frontend_RPMS directory.

Any command that is passed to dis_admin_commandline must be preceded by -cluster <frontend_machine_name> -fabric <adapter_number> . The full list of commands is printed when the program is started with no command line arguments.

Here are the most common commands used for inspection:

After the PCI Express hard- and software has been installed and tested, you can configure your cluster application to make use of the increased performance.